Trace number 3720304

Some explanations

A solver is run under the control of another program named runsolver. runsolver is in charge of imposing the CPU time limit and the memory limit to the solver. It also monitors some information about the process. The trace of the execution of a solver is divided into four (or five) parts:
  1. SOLVER DATA
    This is the output of the solver (stdout and stderr).
    Note that some very long lines in this section may be truncated by your web browser ! In such a case, you may want to use the "Download as text" link to get the trace as a text file.

    When the --timestamp option is passed to the runsolver program, each line output by the solver is prepended with a timestamp which indicates at what time the line was output by the solver. Times are relative to the start of the program, given in seconds. The first timestamp (if present) is estimated CPU time. The last timestamp is wall clock time.

    As some 'v lines' may be very long (sometimes several megabytes), the 'v line' output by your solver may be split on several lines to help limit the size of the trace recorded in the database. In any case, the exact output of your solver is preserved in a trace file.
  2. VERIFIER DATA
    The output of the solver is piped to a verifier program which will search a value line "v " and, if found, will check that the given interpretation satisfies all constraints.
  3. CONVERSION SCRIPT DATA (Optionnal)
    When a conversion script is used, this section shows the messages that were output by the conversion script.
  4. WATCHER DATA
    This is the informations gathered by the runsolver program. It first prints the different limits. There's a first limit on CPU time set to X seconds (see the parameters in the trace). After this time has ellapsed, runsolver sends a SIGTERM and 2 seconds later a SIGKILL to the solver. For safety, there's also another limit set to X+30 seconds which will send a SIGXPU to the solver. The last limit is on the virtual memory used by the process (see the parameters in the trace).
    Every ten seconds, the runsolver process fetches the content of /proc/loadavg, /proc/pid/stat and /proc/pid/statm (see man proc) and prints it as raw data. This is only recorded in case we need to investigate the behaviour of a solver. The memory used by the solver (vsize) is also given every ten seconds.
    When the solver exits, runsolver prints some informations such as status and time. CPU usage is the ratio CPU Time/Real Time.
  5. LAUNCHER DATA
    These informations are related to the script which will launch the solver. The most important informations are the command line given to the solver, the md5sum of the different files and the dump of the /proc/cpuinfo and /proc/meminfo which provides some useful information on the computer.

Solver answer on this benchmark

Solver NameAnswerobjective functionCPU timeWall clock time
PB07: Pueblo 1.4SAT37 1783.01 1783.38

General information on the benchmark

Namenormalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/
haplotype/normalized-simp-unif-100_100.00.opb
MD5SUM9e8d546df5cfe52cfb5a29d8ae802e41
Bench CategoryOPT-SMALLINT (optimisation, small integers)
Best result obtained on this benchmarkOPT
Best value of the objective obtained on this benchmark34
Best CPU time to get the best result obtained on this benchmark12.0122
Has Objective FunctionYES
SatisfiableYES
(Un)Satisfiability was provedYES
Best value of the objective function 34
Optimality of the best value was proved YES
Number of variables8601
Total number of constraints386810
Number of constraints which are clauses384742
Number of constraints which are cardinality constraints (but not clauses)2068
Number of constraints which are nor clauses,nor cardinality constraints0
Minimum length of a constraint1
Maximum length of a constraint94
Number of terms in the objective function 94
Biggest coefficient in the objective function 1
Number of bits for the biggest coefficient in the objective function 1
Sum of the numbers in the objective function 94
Number of bits of the sum of numbers in the objective function 7
Biggest number in a constraint 92
Number of bits of the biggest number in a constraint 7
Biggest sum of numbers in a constraint 186
Number of bits of the biggest sum of numbers8
Number of products (including duplicates)0
Sum of products size (including duplicates)0
Number of different products0
Sum of products size0

Quality of the solution as a function of time


Download the above graph as a PDF file / as an EPS file

Solver Data 

0.00/0.00	c Pueblo version 1.4 (September 2005)
0.00/0.00	c Developed @ University of Michigan, Ann Arbor, MI
0.00/0.00	c  by Hossein Sheini
8.80/8.85	c starting to Solve
8.80/8.85	c #variables read: 8601 - #constraints read: 46862
8.89/8.92	o 51
8.89/8.92	o 50
8.89/8.99	o 49
10.89/10.95	o 48
11.59/11.69	o 47
11.69/11.73	o 46
15.98/16.07	o 45
16.88/16.92	o 44
37.86/37.98	o 43
38.87/38.95	o 42
72.24/72.32	o 41
282.68/282.87	o 40
299.27/299.48	o 39
336.94/337.15	o 38
1005.05/1005.35	o 37
1782.92/1783.37	c total time              : 1783 s
1782.92/1783.37	s SATISFIABLE
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x4133 x4144 x4154 x4163 x4171 x4178 x4184 -x4189 x4279 -x4282 x4284 x888 x1675 x2361 x2946 x3430 x3813 x4095 x4276 x4371 x84 x167 x249 x330 x410 x489 x567 -x644 x720 -x795 x962 x1035 x1107 x1178 x1248 x1317 x1385 x1452 x1518 x1583 x1739 x1802 x1864 x1925 x1985 x2044 x2102 x2159 x2215 x2270 x2415 x2468 x2520 x2571 x2621 x2670 x2718 x2765 x2811 x2856 x2990 x3033 x3075 x3116 x3156 x3195 x3233 x3270 x3306 x3341 x3464 x3497 x3529 x3560 x3590 x3619 x3647 x3674 x3700 x3725 x3837 x3860 x3882 x3903 x3923 x3942 x3960 x3977 x3993 x4008 x4109 x4122 x4134 x4145 -x4155 x4164 x4172 x4179 x4185 x4190 x4280 x4283 x4285 x4286

Verifier Data 

OK	37

Watcher Data 

runsolver Copyright (C) 2010-2011 Olivier ROUSSEL

This is runsolver version 3.3.1 (svn: 989)

This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
GNU General Public License for more details.

command line: BIN/runsolver --timestamp -w /tmp/evaluation-result-3720304-1338509628/watcher-3720304-1338509628 -o /tmp/evaluation-result-3720304-1338509628/solver-3720304-1338509628 -C 1800 -W 1900 -M 15500 Pueblo HOME/instance-3720304-1338509628.opb 

running on 4 cores: 1,3,5,7

Enforcing CPUTime limit (soft limit, will send SIGTERM then SIGKILL): 1800 seconds
Enforcing CPUTime limit (hard limit, will send SIGXCPU): 1830 seconds
Enforcing wall clock limit (soft limit, will send SIGTERM then SIGKILL): 1900 seconds
Enforcing VSIZE limit (soft limit, will send SIGTERM then SIGKILL): 15872000 KiB
Enforcing VSIZE limit (hard limit, stack expansion will fail with SIGSEGV, brk() and mmap() will return ENOMEM): 15923200 KiB
Current StackSize limit: 10240 KiB


[startup+0 s]
/proc/loadavg: 2.00 2.00 1.91 3/176 22065
/proc/meminfo: memFree=27668332/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=3100 CPUtime=0 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 339 0 0 0 0 0 0 0 20 0 1 0 317087226 3174400 277 33554432000 134512640 134579096 4291104448 4290971748 13579056 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 808 279 219 17 0 114 0

[startup+0.039122 s]
/proc/loadavg: 2.00 2.00 1.91 3/176 22065
/proc/meminfo: memFree=27668332/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=4164 CPUtime=0.03 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 606 0 0 0 3 0 0 0 20 0 1 0 317087226 4263936 544 33554432000 134512640 134579096 4291104448 4290971852 134515980 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 1041 544 219 17 0 347 0
Current children cumulated CPU time (s) 0.03
Current children cumulated vsize (KiB) 4164

[startup+0.100217 s]
/proc/loadavg: 2.00 2.00 1.91 3/176 22065
/proc/meminfo: memFree=27668332/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=5632 CPUtime=0.09 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 952 0 0 0 9 0 0 0 20 0 1 0 317087226 5767168 890 33554432000 134512640 134579096 4291104448 4290971964 13568784 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 1408 890 219 17 0 714 0
Current children cumulated CPU time (s) 0.09
Current children cumulated vsize (KiB) 5632

[startup+0.300188 s]
/proc/loadavg: 2.00 2.00 1.91 3/176 22065
/proc/meminfo: memFree=27668332/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=10160 CPUtime=0.29 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 2077 0 0 0 29 0 0 0 20 0 1 0 317087226 10403840 2015 33554432000 134512640 134579096 4291104448 4290971852 12783856 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 2540 2015 219 17 0 1846 0
Current children cumulated CPU time (s) 0.29
Current children cumulated vsize (KiB) 10160

[startup+0.700188 s]
/proc/loadavg: 2.00 2.00 1.91 3/176 22065
/proc/meminfo: memFree=27668332/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=18952 CPUtime=0.69 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 4284 0 0 0 68 1 0 0 20 0 1 0 317087226 19406848 4222 33554432000 134512640 134579096 4291104448 4290971848 12509165 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 4738 4222 219 17 0 4044 0
Current children cumulated CPU time (s) 0.69
Current children cumulated vsize (KiB) 18952

[startup+1.50019 s]
/proc/loadavg: 2.00 2.00 1.91 3/177 22066
/proc/meminfo: memFree=27645780/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=36400 CPUtime=1.49 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 8659 0 0 0 147 2 0 0 20 0 1 0 317087226 37273600 8597 33554432000 134512640 134579096 4291104448 4290971872 134534786 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 9100 8598 219 17 0 8406 0
Current children cumulated CPU time (s) 1.49
Current children cumulated vsize (KiB) 36400

[startup+3.10019 s]
/proc/loadavg: 2.00 2.00 1.91 3/177 22066
/proc/meminfo: memFree=27621568/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=57252 CPUtime=3.08 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 13737 0 0 0 306 2 0 0 20 0 1 0 317087226 58626048 13675 33554432000 134512640 134579096 4291104448 4291103424 134532045 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 14313 13675 227 17 0 13619 0
Current children cumulated CPU time (s) 3.08
Current children cumulated vsize (KiB) 57252

[startup+6.30019 s]
/proc/loadavg: 2.00 2.00 1.91 3/177 22066
/proc/meminfo: memFree=27613640/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=57412 CPUtime=6.28 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 13785 0 0 0 626 2 0 0 20 0 1 0 317087226 58789888 13723 33554432000 134512640 134579096 4291104448 4291103408 134532448 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 14353 13723 227 17 0 13659 0
Current children cumulated CPU time (s) 6.28
Current children cumulated vsize (KiB) 57412

[startup+12.7002 s]
/proc/loadavg: 1.92 1.98 1.91 3/177 22114
/proc/meminfo: memFree=28095268/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=61908 CPUtime=12.69 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 14869 0 0 0 1264 5 0 0 20 0 1 0 317087226 63393792 14807 33554432000 134512640 134579096 4291104448 4291103248 134528619 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 15477 14807 228 17 0 14783 0
Current children cumulated CPU time (s) 12.69
Current children cumulated vsize (KiB) 61908

[startup+25.5002 s]
/proc/loadavg: 1.93 1.98 1.91 3/177 22114
/proc/meminfo: memFree=28091424/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=64740 CPUtime=25.48 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 15573 0 0 0 2541 7 0 0 20 0 1 0 317087226 66293760 15504 33554432000 134512640 134579096 4291104448 4291102784 134532935 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 16185 15504 228 17 0 15491 0
Current children cumulated CPU time (s) 25.48
Current children cumulated vsize (KiB) 64740

[startup+51.1003 s]
/proc/loadavg: 2.02 2.00 1.91 3/177 22162
/proc/meminfo: memFree=28043388/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=84268 CPUtime=51.05 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 20432 0 0 0 5092 13 0 0 20 0 1 0 317087226 86290432 20347 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 21067 20347 228 17 0 20373 0
Current children cumulated CPU time (s) 51.05
Current children cumulated vsize (KiB) 84268

[startup+102.307 s]
/proc/loadavg: 2.00 2.00 1.91 3/177 22162
/proc/meminfo: memFree=28026740/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=99028 CPUtime=102.24 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 24142 0 0 0 10201 23 0 0 20 0 1 0 317087226 101404672 24088 33554432000 134512640 134579096 4291104448 4291103376 134559533 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 24757 24088 228 17 0 24063 0
Current children cumulated CPU time (s) 102.24
Current children cumulated vsize (KiB) 99028

[startup+162.3 s]
/proc/loadavg: 2.00 2.00 1.91 3/176 22162
/proc/meminfo: memFree=27960620/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=151612 CPUtime=162.21 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 37303 0 0 0 16188 33 0 0 20 0 1 0 317087226 155250688 37231 33554432000 134512640 134579096 4291104448 4291103296 134527833 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 37903 37231 228 17 0 37209 0
Current children cumulated CPU time (s) 162.21
Current children cumulated vsize (KiB) 151612

[startup+222.3 s]
/proc/loadavg: 2.00 2.00 1.91 3/177 22163
/proc/meminfo: memFree=27918212/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=169968 CPUtime=222.19 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 41932 0 0 0 22176 43 0 0 20 0 1 0 317087226 174047232 41849 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 42492 41849 228 17 0 41798 0
Current children cumulated CPU time (s) 222.19
Current children cumulated vsize (KiB) 169968

[startup+282.3 s]
/proc/loadavg: 2.05 2.01 1.92 3/177 22163
/proc/meminfo: memFree=27883368/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=184784 CPUtime=282.18 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 45640 0 0 0 28167 51 0 0 20 0 1 0 317087226 189218816 45557 33554432000 134512640 134579096 4291104448 4291103296 134527812 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 46196 45557 228 17 0 45502 0
Current children cumulated CPU time (s) 282.18
Current children cumulated vsize (KiB) 184784

[startup+342.3 s]
/proc/loadavg: 2.01 2.01 1.92 3/177 22163
/proc/meminfo: memFree=27880048/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=184784 CPUtime=342.14 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 45657 0 0 0 34157 57 0 0 20 0 1 0 317087226 189218816 45565 33554432000 134512640 134579096 4291104448 4291103296 134527765 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 46196 45565 228 17 0 45502 0
Current children cumulated CPU time (s) 342.14
Current children cumulated vsize (KiB) 184784

[startup+402.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22166
/proc/meminfo: memFree=27878092/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=186652 CPUtime=402.14 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 46102 0 0 0 40150 64 0 0 20 0 1 0 317087226 191131648 46010 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 46663 46010 228 17 0 45969 0
Current children cumulated CPU time (s) 402.14
Current children cumulated vsize (KiB) 186652

[startup+462.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22167
/proc/meminfo: memFree=27877720/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=186648 CPUtime=462.13 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 46102 0 0 0 46142 71 0 0 20 0 1 0 317087226 191127552 46010 33554432000 134512640 134579096 4291104448 4291103268 134556290 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 46662 46010 228 17 0 45968 0
Current children cumulated CPU time (s) 462.13
Current children cumulated vsize (KiB) 186648

[startup+522.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22168
/proc/meminfo: memFree=27863148/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=188092 CPUtime=522.12 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 46468 0 0 0 52133 79 0 0 20 0 1 0 317087226 192606208 46389 33554432000 134512640 134579096 4291104448 4291103264 134519064 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 47023 46389 228 17 0 46329 0
Current children cumulated CPU time (s) 522.12
Current children cumulated vsize (KiB) 188092

[startup+582.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22168
/proc/meminfo: memFree=27839988/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=188080 CPUtime=582.1 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 46468 0 0 0 58124 86 0 0 20 0 1 0 317087226 192593920 46389 33554432000 134512640 134579096 4291104448 4291103296 134527740 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 47020 46389 228 17 0 46326 0
Current children cumulated CPU time (s) 582.1
Current children cumulated vsize (KiB) 188080

[startup+642.3 s]

################
# More data... #
################

/proc/meminfo: memFree=27827836/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=188064 CPUtime=822.07 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 46479 0 0 0 82087 120 0 0 20 0 1 0 317087226 192577536 46400 33554432000 134512640 134579096 4291104448 4291103268 134556279 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 47016 46400 228 17 0 46322 0
Current children cumulated CPU time (s) 822.07
Current children cumulated vsize (KiB) 188064

[startup+882.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22169
/proc/meminfo: memFree=27820768/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=188060 CPUtime=882.06 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 46479 0 0 0 88082 124 0 0 20 0 1 0 317087226 192573440 46400 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 47015 46400 228 17 0 46321 0
Current children cumulated CPU time (s) 882.06
Current children cumulated vsize (KiB) 188060

[startup+942.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22169
/proc/meminfo: memFree=27817792/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=191888 CPUtime=942.05 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47420 0 0 0 94075 130 0 0 20 0 1 0 317087226 196493312 47341 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 47972 47341 228 17 0 47278 0
Current children cumulated CPU time (s) 942.05
Current children cumulated vsize (KiB) 191888

[startup+1002.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/178 22172
/proc/meminfo: memFree=27814292/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=194120 CPUtime=1002.04 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47978 0 0 0 100066 138 0 0 20 0 1 0 317087226 198778880 47899 33554432000 134512640 134579096 4291104448 4291103376 134559533 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 48530 47899 228 17 0 47836 0
Current children cumulated CPU time (s) 1002.04
Current children cumulated vsize (KiB) 194120

[startup+1062.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22172
/proc/meminfo: memFree=27812812/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=194076 CPUtime=1062.04 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47978 0 0 0 106057 147 0 0 20 0 1 0 317087226 198733824 47899 33554432000 134512640 134579096 4291104448 4291103376 134559526 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 48519 47899 228 17 0 47825 0
Current children cumulated CPU time (s) 1062.04
Current children cumulated vsize (KiB) 194076

[startup+1122.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22173
/proc/meminfo: memFree=27768600/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=194076 CPUtime=1122.02 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47981 0 0 0 112050 152 0 0 20 0 1 0 317087226 198733824 47902 33554432000 134512640 134579096 4291104448 4291103296 134527759 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 48519 47902 228 17 0 47825 0
Current children cumulated CPU time (s) 1122.02
Current children cumulated vsize (KiB) 194076

[startup+1182.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/177 22173
/proc/meminfo: memFree=27722640/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=194076 CPUtime=1182.02 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47981 0 0 0 118042 160 0 0 20 0 1 0 317087226 198733824 47902 33554432000 134512640 134579096 4291104448 4291103344 134516696 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 48519 47902 228 17 0 47825 0
Current children cumulated CPU time (s) 1182.02
Current children cumulated vsize (KiB) 194076

[startup+1242.3 s]
/proc/loadavg: 2.00 2.00 1.92 3/178 22174
/proc/meminfo: memFree=27678020/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=194076 CPUtime=1242 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47981 0 0 0 124035 165 0 0 20 0 1 0 317087226 198733824 47902 33554432000 134512640 134579096 4291104448 4291103376 134559533 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 48519 47902 228 17 0 47825 0
Current children cumulated CPU time (s) 1242
Current children cumulated vsize (KiB) 194076

[startup+1302.3 s]
/proc/loadavg: 2.05 2.01 1.93 3/177 22174
/proc/meminfo: memFree=27675964/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=193944 CPUtime=1302.01 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47981 0 0 0 130029 172 0 0 20 0 1 0 317087226 198598656 47880 33554432000 134512640 134579096 4291104448 4291103376 134559533 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 48486 47880 228 17 0 47792 0
Current children cumulated CPU time (s) 1302.01
Current children cumulated vsize (KiB) 193944

[startup+1362.3 s]
/proc/loadavg: 2.02 2.01 1.93 3/177 22174
/proc/meminfo: memFree=27676212/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=193944 CPUtime=1361.99 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47981 0 0 0 136022 177 0 0 20 0 1 0 317087226 198598656 47880 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 48486 47880 228 17 0 47792 0
Current children cumulated CPU time (s) 1361.99
Current children cumulated vsize (KiB) 193944

[startup+1422.31 s]
/proc/loadavg: 2.00 2.00 1.93 3/177 22175
/proc/meminfo: memFree=27676336/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=193944 CPUtime=1421.98 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 47982 0 0 0 142016 182 0 0 20 0 1 0 317087226 198598656 47881 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 48486 47881 228 17 0 47792 0
Current children cumulated CPU time (s) 1421.98
Current children cumulated vsize (KiB) 193944

[startup+1482.3 s]
/proc/loadavg: 2.00 2.00 1.93 3/177 22175
/proc/meminfo: memFree=27668276/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=202628 CPUtime=1481.97 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 50017 0 0 0 148006 191 0 0 20 0 1 0 317087226 207491072 49916 33554432000 134512640 134579096 4291104448 4291103360 134559161 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 50657 49916 228 17 0 49963 0
Current children cumulated CPU time (s) 1481.97
Current children cumulated vsize (KiB) 202628

[startup+1542.3 s]
/proc/loadavg: 2.00 2.00 1.93 3/177 22175
/proc/meminfo: memFree=27668276/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=202628 CPUtime=1541.96 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 50017 0 0 0 153998 198 0 0 20 0 1 0 317087226 207491072 49916 33554432000 134512640 134579096 4291104448 4291103376 134559533 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 50657 49916 228 17 0 49963 0
Current children cumulated CPU time (s) 1541.96
Current children cumulated vsize (KiB) 202628

[startup+1602.3 s]
/proc/loadavg: 2.03 2.01 1.93 3/178 22178
/proc/meminfo: memFree=27667896/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=202628 CPUtime=1601.95 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 50017 0 0 0 159991 204 0 0 20 0 1 0 317087226 207491072 49916 33554432000 134512640 134579096 4291104448 4291103312 134520147 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 50657 49916 228 17 0 49963 0
Current children cumulated CPU time (s) 1601.95
Current children cumulated vsize (KiB) 202628

[startup+1662.3 s]
/proc/loadavg: 2.01 2.01 1.93 3/177 22178
/proc/meminfo: memFree=27668152/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=202612 CPUtime=1661.94 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 50017 0 0 0 165983 211 0 0 20 0 1 0 317087226 207474688 49916 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 50653 49916 228 17 0 49959 0
Current children cumulated CPU time (s) 1661.94
Current children cumulated vsize (KiB) 202612

[startup+1722.3 s]
/proc/loadavg: 2.00 2.00 1.93 3/177 22179
/proc/meminfo: memFree=27667896/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=202612 CPUtime=1721.93 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 50021 0 0 0 171975 218 0 0 20 0 1 0 317087226 207474688 49918 33554432000 134512640 134579096 4291104448 4291103296 134527753 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 50653 49918 228 17 0 49959 0
Current children cumulated CPU time (s) 1721.93
Current children cumulated vsize (KiB) 202612

[startup+1782.3 s]
/proc/loadavg: 2.06 2.01 1.94 3/177 22179
/proc/meminfo: memFree=27667896/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=202612 CPUtime=1781.93 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 50021 0 0 0 177968 225 0 0 20 0 1 0 317087226 207474688 49918 33554432000 134512640 134579096 4291104448 4291103296 134527742 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 50653 49918 228 17 0 49959 0
Current children cumulated CPU time (s) 1781.93
Current children cumulated vsize (KiB) 202612

Solver just ended. Dumping a history of the last processes samples

[startup+1783.11 s]
/proc/loadavg: 2.05 2.01 1.94 3/177 22179
/proc/meminfo: memFree=27667772/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=202612 CPUtime=1782.73 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 50021 0 0 0 178048 225 0 0 20 0 1 0 317087226 207474688 49918 33554432000 134512640 134579096 4291104448 4291103420 1115184 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 50653 49918 228 17 0 49959 0
Current children cumulated CPU time (s) 1782.73
Current children cumulated vsize (KiB) 202612

[startup+1783.3 s]
/proc/loadavg: 2.05 2.01 1.94 3/177 22179
/proc/meminfo: memFree=27667772/32873844 swapFree=7628/7628
[pid=22065] ppid=22063 vsize=202612 CPUtime=1782.92 cores=1,3,5,7
/proc/22065/stat : 22065 (Pueblo) R 22063 22065 21713 0 -1 4202496 50021 0 0 0 178067 225 0 0 20 0 1 0 317087226 207474688 49918 33554432000 134512640 134579096 4291104448 4291103296 134527818 0 0 4096 0 0 0 0 17 5 0 0 0 0 0
/proc/22065/statm: 50653 49918 228 17 0 49959 0
Current children cumulated CPU time (s) 1782.92
Current children cumulated vsize (KiB) 202612

Child status: 10
Real time (s): 1783.38
CPU time (s): 1783.01
CPU user time (s): 1780.75
CPU system time (s): 2.25666
CPU usage (%): 99.9794
Max. virtual memory (cumulated for all children) (KiB): 202628

getrusage(RUSAGE_CHILDREN,...) data:
user time used= 1780.75
system time used= 2.25666
maximum resident set size= 199692
integral shared memory size= 0
integral unshared data size= 0
integral unshared stack size= 0
page reclaims= 50026
page faults= 0
swaps= 0
block input operations= 0
block output operations= 0
messages sent= 0
messages received= 0
signals received= 0
voluntary context switches= 104
involuntary context switches= 1831

runsolver used 2.52662 second user time and 7.33289 second system time

The end

Launcher Data 

Begin job on node143 at 2012-06-01 02:13:49
IDJOB=3720304
IDBENCH=2957
IDSOLVER=2305
FILE ID=node143/3720304-1338509628
RUNJOBID= node143-1338505994-21730
PBS_JOBID= 14635748
Free space on /tmp= 68532 MiB

SOLVER NAME= Pueblo 1.4
BENCH NAME= PB06/final/normalized-PB06/OPT-SMALLINT/submitted-PB06/manquiho/haplotype/normalized-simp-unif-100_100.00.opb
COMMAND LINE= Pueblo BENCHNAME
CONVERSION SCRIPT= PBconversionToLinear BENCHNAME
RUNSOLVER COMMAND LINE= BIN/runsolver --timestamp -w /tmp/evaluation-result-3720304-1338509628/watcher-3720304-1338509628 -o /tmp/evaluation-result-3720304-1338509628/solver-3720304-1338509628 -C 1800 -W 1900 -M 15500  Pueblo HOME/instance-3720304-1338509628.opb

TIME LIMIT= 1800 seconds
MEMORY LIMIT= 15500 MiB
NBCORE= 4

MD5SUM BENCH= 9e8d546df5cfe52cfb5a29d8ae802e41
RANDOM SEED=132161624

node143.alineos.net Linux 2.6.32-71.29.1.el6.x86_64 #1 SMP Mon Jun 27 19:49:27 BST 2011

/proc/cpuinfo:
processor	: 0
vendor_id	: GenuineIntel
cpu family	: 6
model		: 26
model name	: Intel(R) Xeon(R) CPU           X5550  @ 2.67GHz
stepping	: 5
cpu MHz		: 2666.787
cache size	: 8192 KB
physical id	: 0
siblings	: 4
core id		: 0
cpu cores	: 4
apicid		: 0
initial apicid	: 0
fpu		: yes
fpu_exception	: yes
cpuid level	: 11
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips	: 5333.57
clflush size	: 64
cache_alignment	: 64
address sizes	: 40 bits physical, 48 bits virtual
power management:

processor	: 1
vendor_id	: GenuineIntel
cpu family	: 6
model		: 26
model name	: Intel(R) Xeon(R) CPU           X5550  @ 2.67GHz
stepping	: 5
cpu MHz		: 2666.787
cache size	: 8192 KB
physical id	: 1
siblings	: 4
core id		: 0
cpu cores	: 4
apicid		: 16
initial apicid	: 16
fpu		: yes
fpu_exception	: yes
cpuid level	: 11
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips	: 5331.91
clflush size	: 64
cache_alignment	: 64
address sizes	: 40 bits physical, 48 bits virtual
power management:

processor	: 2
vendor_id	: GenuineIntel
cpu family	: 6
model		: 26
model name	: Intel(R) Xeon(R) CPU           X5550  @ 2.67GHz
stepping	: 5
cpu MHz		: 2666.787
cache size	: 8192 KB
physical id	: 0
siblings	: 4
core id		: 1
cpu cores	: 4
apicid		: 2
initial apicid	: 2
fpu		: yes
fpu_exception	: yes
cpuid level	: 11
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips	: 5331.91
clflush size	: 64
cache_alignment	: 64
address sizes	: 40 bits physical, 48 bits virtual
power management:

processor	: 3
vendor_id	: GenuineIntel
cpu family	: 6
model		: 26
model name	: Intel(R) Xeon(R) CPU           X5550  @ 2.67GHz
stepping	: 5
cpu MHz		: 2666.787
cache size	: 8192 KB
physical id	: 1
siblings	: 4
core id		: 1
cpu cores	: 4
apicid		: 18
initial apicid	: 18
fpu		: yes
fpu_exception	: yes
cpuid level	: 11
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips	: 5331.91
clflush size	: 64
cache_alignment	: 64
address sizes	: 40 bits physical, 48 bits virtual
power management:

processor	: 4
vendor_id	: GenuineIntel
cpu family	: 6
model		: 26
model name	: Intel(R) Xeon(R) CPU           X5550  @ 2.67GHz
stepping	: 5
cpu MHz		: 2666.787
cache size	: 8192 KB
physical id	: 0
siblings	: 4
core id		: 2
cpu cores	: 4
apicid		: 4
initial apicid	: 4
fpu		: yes
fpu_exception	: yes
cpuid level	: 11
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips	: 5331.90
clflush size	: 64
cache_alignment	: 64
address sizes	: 40 bits physical, 48 bits virtual
power management:

processor	: 5
vendor_id	: GenuineIntel
cpu family	: 6
model		: 26
model name	: Intel(R) Xeon(R) CPU           X5550  @ 2.67GHz
stepping	: 5
cpu MHz		: 2666.787
cache size	: 8192 KB
physical id	: 1
siblings	: 4
core id		: 2
cpu cores	: 4
apicid		: 20
initial apicid	: 20
fpu		: yes
fpu_exception	: yes
cpuid level	: 11
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips	: 5298.57
clflush size	: 64
cache_alignment	: 64
address sizes	: 40 bits physical, 48 bits virtual
power management:

processor	: 6
vendor_id	: GenuineIntel
cpu family	: 6
model		: 26
model name	: Intel(R) Xeon(R) CPU           X5550  @ 2.67GHz
stepping	: 5
cpu MHz		: 2666.787
cache size	: 8192 KB
physical id	: 0
siblings	: 4
core id		: 3
cpu cores	: 4
apicid		: 6
initial apicid	: 6
fpu		: yes
fpu_exception	: yes
cpuid level	: 11
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips	: 5331.91
clflush size	: 64
cache_alignment	: 64
address sizes	: 40 bits physical, 48 bits virtual
power management:

processor	: 7
vendor_id	: GenuineIntel
cpu family	: 6
model		: 26
model name	: Intel(R) Xeon(R) CPU           X5550  @ 2.67GHz
stepping	: 5
cpu MHz		: 2666.787
cache size	: 8192 KB
physical id	: 1
siblings	: 4
core id		: 3
cpu cores	: 4
apicid		: 22
initial apicid	: 22
fpu		: yes
fpu_exception	: yes
cpuid level	: 11
wp		: yes
flags		: fpu vme de pse tsc msr pae mce cx8 apic mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx rdtscp lm constant_tsc arch_perfmon pebs bts rep_good xtopology nonstop_tsc aperfmperf pni dtes64 monitor ds_cpl vmx est tm2 ssse3 cx16 xtpr pdcm dca sse4_1 sse4_2 popcnt lahf_lm ida tpr_shadow vnmi flexpriority ept vpid
bogomips	: 5331.91
clflush size	: 64
cache_alignment	: 64
address sizes	: 40 bits physical, 48 bits virtual
power management:


/proc/meminfo:
MemTotal:       32873844 kB
MemFree:        27668868 kB
Buffers:          311636 kB
Cached:          3507740 kB
SwapCached:          112 kB
Active:          2387416 kB
Inactive:        1926668 kB
Active(anon):     486164 kB
Inactive(anon):    10916 kB
Active(file):    1901252 kB
Inactive(file):  1915752 kB
Unevictable:        7628 kB
Mlocked:            7628 kB
SwapTotal:      67108856 kB
SwapFree:       67108424 kB
Dirty:             15168 kB
Writeback:             4 kB
AnonPages:        501560 kB
Mapped:            11232 kB
Shmem:               160 kB
Slab:             753092 kB
SReclaimable:     195528 kB
SUnreclaim:       557564 kB
KernelStack:        1456 kB
PageTables:         4872 kB
NFS_Unstable:          0 kB
Bounce:                0 kB
WritebackTmp:          0 kB
CommitLimit:    83545776 kB
Committed_AS:     612512 kB
VmallocTotal:   34359738367 kB
VmallocUsed:      346368 kB
VmallocChunk:   34341987984 kB
HardwareCorrupted:     0 kB
AnonHugePages:    440320 kB
HugePages_Total:       0
HugePages_Free:        0
HugePages_Rsvd:        0
HugePages_Surp:        0
Hugepagesize:       2048 kB
DirectMap4k:        7872 kB
DirectMap2M:    33538048 kB

CONVERSION COMMAND LINE= PBconversionToLinear HOME/instance-3720304-1338509628.opb

Free space on /tmp at the end= 68528 MiB
End job on node143 at 2012-06-01 02:43:32